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  • ajendrex
    replied
    What software are you using, if any?

    I am looking for the different options that there are for doing the sames tasks that you mentioned in your question. Could you or anyone help me improving the list that I have so far?

    MUMmer http://mummer.sourceforge.net/
    CoGe http://genomevolution.org/CoGe/index.pl
    Vista tools http://genome.lbl.gov/vista/index.shtml

    Leave a comment:


  • pDNA
    started a topic Software for comparative genomics of prokaryotes

    Software for comparative genomics of prokaryotes

    Dear people,

    can somebody suggest some software tool for comparative genomics of bacteria? It would be great to have a standalone software that is not web-based. I'm looking for a tool that is able draw synteny plots, can take the annotation of a reference genome and apply it to the new assembled sequence.
    Additional it would be great to have a software that can connect the synteny with the sequence (like the Synmap and Gevo).

    Maybe some can help!

    Many thanks in advance!

    Best regards,
    p

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