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  • Jsmith41
    Junior Member
    • Feb 2016
    • 5

    #1

    Seperating First-in-Pair dUTP RNA-seq BAM

    Hi i have searched the forums but have not found an answer. I have RNA-seq data prepared using dUTP method, paired-end reads and can easily see in IGV when organised by first-in-pair-strand which strand the reads align to. Is there a way to seperate the BAM file so i can generate 2 files, one for each strand for viewing?

    The reads have been aligned with STAR.

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