Hello all,
I am doing some post-sequencing quality control as well as some interspecific comparison and was wondering if anyone out there had a good suggestion on a means of generating metrics like GC-content quickly for both a larger number of short reads and whole genome sequence. I can do it through some commercial software, but it's kind of cumbersome and indirect. I could write something, but given my scripting ability, it'll probably be real slow. Any suggests on a simple program out there I could use to generate a bunch of estimates from these different types of samples?
Thanks
I am doing some post-sequencing quality control as well as some interspecific comparison and was wondering if anyone out there had a good suggestion on a means of generating metrics like GC-content quickly for both a larger number of short reads and whole genome sequence. I can do it through some commercial software, but it's kind of cumbersome and indirect. I could write something, but given my scripting ability, it'll probably be real slow. Any suggests on a simple program out there I could use to generate a bunch of estimates from these different types of samples?
Thanks
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