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  • how to match snp position to GRCh37 release?

    I have got rs# and position, and download GRCh37 released genome database. SNP position is labeled by ref-assembly. How to translate the ref-assembly position to GRCh37 position?

  • #2
    Depending on database but in general now:
    human primary reference assembly=GRCh37

    If you used dbSNP to get the IDs or find the appropriate position is listed
    If using UCSC correct bp +1 to offset their use of 0-base indexing

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