How to calculate GC% in R?
Hi everybody, I'd like to know if there is a tool in R to calculate CG% content and G° if it's possible too from a table with several genes. I have almost 300 genes and I have their sequences. I can calculate it individually, but I'd like to accelerate the process. Any idea? Thanks so much for your time.
-
-
While you could do this in R, it may be much simpler to use a tool like geecee from EMBOSS on the command line.
You could also use a web interface if you prefer that. -
Thanks so much! That's exactly what I was looking for! I know nothing about bioinformatic tools, so this kind of experiences are useful to learn something. Thanks again!Comment
-
Tumors contain complex mixtures of cell populations that evolve in response to treatment and host-specific factors. Tissue biopsies provide only static snapshots of a tumor’s state. But what if we could follow that evolution over time using a minimally invasive technique?
Liquid biopsies can detect tumor-derived material circulating in the bloodstream, providing a way to study treatment response, detect emerging resistance, and discover new biomarkers. Circulating...10-14-2026, 09:55 AM -
Researchers using sequencing and genomics tools often have to make trade-offs. They can choose between speed or scale, short reads or long-range information, or targeted panels or a view of the whole transcriptome. New technologies that have been released this year are built to address those tough choices.
We asked six companies the same four questions to learn about their latest products. The new technologies bring a lot to the table, including rethinking sequencing...
Comment