how to install GATK through terminal in ubuntu?
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The GATK distribution is a jar file, it should run if you have java installed. -
The information you are looking for can be found here: https://software.broadinstitute.org/...quickstart.phpComment
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Gatk
can i input .sam file to GATK in linux??Comment
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GATK is one of the best documented software in Bioinformatics, are you even making an effort to go to their webpage and reading tutorials or documentation?Last edited by vivek_; 01-25-2017, 05:35 AM.Comment
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But reading is hard and takes time, therefore it's easier to just ask people who volunteer online to help and waste their time instead.Originally posted by vivek_ View PostComment
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error while running
when ever i try to run "java -jar GeomeAnalysis.jar" its showing "unable to access jarfile GenomeAnalysisTK.jar" but when i use "java $GATK -h" gatk environment is coming..please help me in running the toolComment
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