Tweet
how to install GATK through terminal in ubuntu?
-
-
The GATK distribution is a jar file, it should run if you have java installed. -
The information you are looking for can be found here: https://software.broadinstitute.org/...quickstart.phpComment
-
Gatk
can i input .sam file to GATK in linux??Comment
-
GATK is one of the best documented software in Bioinformatics, are you even making an effort to go to their webpage and reading tutorials or documentation?Last edited by vivek_; 01-25-2017, 05:35 AM.Comment
-
But reading is hard and takes time, therefore it's easier to just ask people who volunteer online to help and waste their time instead.Originally posted by vivek_ View PostComment
-
error while running
when ever i try to run "java -jar GeomeAnalysis.jar" its showing "unable to access jarfile GenomeAnalysisTK.jar" but when i use "java $GATK -h" gatk environment is coming..please help me in running the toolComment
-
I’m not a sequencing expert. I’m a purification scientist who uses NGS to evaluate workflows my group develops. With this perspective, we think about the sample first and the NGS workflow second. The sequencer is an exceptionally honest reporter, but it can only report on what you give it, so whether you get clean, interpretable data from an NGS workflow is largely determined before you begin.
Here are nine questions we think about, in roughly the order they matter, before...06-18-2026, 07:11 AM -
Data variability is still an issue in sequencing technologies despite the advances in reproducibility and accuracy of these platforms. But the problem does not originate in the sequencing itself, but in the previous steps, before the sample reaches the sequencer.
The first step is collection, followed by preservation and sample preparation for analysis. Most scientists overlook those steps, but not being careful might just be skewing the experiment’s results.
...06-02-2026, 10:05 AM
Comment