basecalling/demultiplexing NxtSeq runs under Windows

Flo2000

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Join Date: Jan 2017

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#1

basecalling/demultiplexing NxtSeq runs under Windows

01-30-2017, 06:09 AM

Hi everybody,

it will take some additional weeks before we get our linux server...is there a possibility to do basecalling/demultiplexing of our NxtSeq run on a Windows machine if you don't want to use Cygwin for that single purpose?

Best

Flo
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GenoMax

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Join Date: Feb 2008

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01-30-2017, 06:23 AM

AFAIK bcl2fastq v.2.18 is only available for linux. Rather than cygwin you could use a virtual machine with unix.

If you are able to use BaseSpace then that may be an option (though I don't have first hand experience with it).
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basecalling/demultiplexing NxtSeq runs under Windows

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