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  • VIB_user
    Junior Member
    • Oct 2010
    • 7

    #1

    mock control sampels?? to analyse peaks

    hi,
    I am analysing peaks from ChIP-seq data, however this is the first time i'm doing this and in all the literature and in tools they are talking about (mock) control sampels

    if i visualise my data in ucsc genome browser, I compare my + strand with my - strand of one chromosome (the peaks), is this right or do i have to compare my + strand with some other data ? if so, can someone pls tell me what data and tell me how to get it?

    thank you in advance
  • sp_wade
    Junior Member
    • Mar 2010
    • 9

    #2
    hi,VIB,
    the +/-mark is used to find peaks,so it is unnecessary to compare with other data.Just use the mock data to filter the false positive sites(peaks).
    Hope this make sense!

    Comment

    • VIB_user
      Junior Member
      • Oct 2010
      • 7

      #3
      yes, i've found it now
      thank you very much

      Comment

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