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  • How can I select my Chip-seq genes (targets) in my Rna-seq data?

    Hi, I want to select my target genes found in my ChIP-seq data (Genes Names by HOMER) within my Cuffdiff output list of differentially expressed genes (RNA-seq data), so I can select cufflinks genes ids of target genes (“XLOC_” ids), selecting the lines table from my cuffdiff file where are the specific target genes names, so I can create heatmaps of these genes using RNA-seq data in R. Can someone give me a simple solution?
    I just want select gene names lines in my cuffdiff table

    Thank you!
    Last edited by luisnagano; 02-08-2017, 03:59 PM. Reason: improve information message

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