Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
Collapse
 
  • Page of 1
  • Filter
  • Time
  • Show
Clear All
new posts
Previous template Next
  • #1

    Vcf gui

    Hello,
    I have annotated my vcf files using SnpSift/SnpEff. Now I'm looking for a gui to view and filter my vcf files.

    Until now I only found vcf-miner which looks promising. But I didn't manage to get it run. Neither under windows nor under linux.

    So, did someone knows other tools?

    fin swimmer
    Tags: None
  • #2
    It's not free (I build it at Golden Helix for a living) but VarSeq is a commercial solution for doing this.

    VarSeq | Golden Helix, Inc.
    http://goldenhelix.com/products/VarSeq/
    VarSeq is the world's leading clinical variant interpretation solution for genomic variant analysis, fully integrated with CNV, AMP, and ACMG guidelines. Trial the top next-generation sequencing platform for free today.


    There are various command line utilities that are free, such as exomiser[0], but not aware of any polished GUI tools that are free.

    [0] http://www.sanger.ac.uk/science/tools/exomiser

    Comment

    Previous template Next

    Latest Articles

    Collapse
    • seqadmin
      Recent Advances in Sequencing Analysis Tools
      by seqadmin


      The sequencing world is rapidly changing due to declining costs, enhanced accuracies, and the advent of newer, cutting-edge instruments. Equally important to these developments are improvements in sequencing analysis, a process that converts vast amounts of raw data into a comprehensible and meaningful form. This complex task requires expertise and the right analysis tools. In this article, we highlight the progress and innovation in sequencing analysis by reviewing several of the...
      Yesterday, 07:48 AM
    • seqadmin
      Essential Discoveries and Tools in Epitranscriptomics
      by seqadmin




      The field of epigenetics has traditionally concentrated more on DNA and how changes like methylation and phosphorylation of histones impact gene expression and regulation. However, our increased understanding of RNA modifications and their importance in cellular processes has led to a rise in epitranscriptomics research. “Epitranscriptomics brings together the concepts of epigenetics and gene expression,” explained Adrien Leger, PhD, Principal Research Scientist...
      04-22-2024, 07:01 AM
    View All

    ad_right_rmr

    Collapse

    News

    Collapse
    Topics Statistics Last Post
    Telomere Maintenance by PARP1: A New Perspective in Cancer Research by seqadmin
    Started by seqadmin, Today, 06:57 AM
    0 responses
    9 views
    0 likes
    		 Last Post seqadmin
    by seqadmin
    Today, 06:57 AM  
    Enhanced Neoantigen Detection: Introducing NeoHunter by seqadmin
    Started by seqadmin, Yesterday, 07:17 AM
    0 responses
    13 views
    0 likes
    		 Last Post seqadmin
    by seqadmin
    Yesterday, 07:17 AM  
    A Close Examination at Probiotic-Related Bacteremia by seqadmin
    Started by seqadmin, 05-02-2024, 08:06 AM
    0 responses
    19 views
    0 likes
    		 Last Post seqadmin
    by seqadmin
    05-02-2024, 08:06 AM  
    Expanded Genetic Insights into Blood Pressure Regulation by seqadmin
    Started by seqadmin, 04-30-2024, 12:17 PM
    0 responses
    22 views
    0 likes
    		 Last Post seqadmin
    by seqadmin
    04-30-2024, 12:17 PM  
    View All
    Working...
    X