Unconfigured Ad

Collapse
X
 
  • Filter
  • Time
  • Show
Clear All
new posts
  • skycreative
    Member
    • Jan 2010
    • 33

    stringtie genes abundances bug or problems?

    Hi, I am using stringtie-1.3.2d.Linux_x86_64 to caculate genes abundances with -A parameter.
    However, some records seems not so good.

    nad4 nad4 KT428651 + 153710 155758 0.587116 0.159336 0.089332
    STRG.2 - KT428651 + 153710 155758 0.587116 0.159336 0.089332

    these two are at same location and same expression value, why here two records?

    May I just discard the second one? Why this happen?

    //bow
  • skycreative
    Member
    • Jan 2010
    • 33

    #2
    Any suggestions?

    Comment

    • skycreative
      Member
      • Jan 2010
      • 33

      #3
      Anyone would give any suggestion? I am waiting!

      Comment

      Latest Articles

      Collapse

      • GATTACAT
        Reply to Nine Things a Sample Prep Scientist Thinks About Before Sequencing
        by GATTACAT
        Love this - good data definitely starts from good input, and poor input can only give relatively poor data. I particularly like the mention of Nanodrop/absorbance based methods for quantification. It's such a toss up if you'll get an accurate reading or what amounts to a randomly generated number, and a lot of library/sequencing related issues can be traced back to poor quant.
        07-01-2026, 11:43 AM
      • SEQadmin2
        Nine Things a Sample Prep Scientist Thinks About Before Sequencing
        by SEQadmin2


        I’m not a sequencing expert. I’m a purification scientist who uses NGS to evaluate workflows my group develops. With this perspective, we think about the sample first and the NGS workflow second. The sequencer is an exceptionally honest reporter, but it can only report on what you give it, so whether you get clean, interpretable data from an NGS workflow is largely determined before you begin.

        Here are nine questions we think about, in roughly the order they matter, before...
        06-18-2026, 07:11 AM

      ad_right_rmr

      Collapse

      News

      Collapse

      Topics Statistics Last Post
      Started by SEQadmin2, 07-02-2026, 11:08 AM
      0 responses
      22 views
      0 reactions
      Last Post SEQadmin2  
      Started by SEQadmin2, 06-30-2026, 05:37 AM
      0 responses
      23 views
      0 reactions
      Last Post SEQadmin2  
      Started by SEQadmin2, 06-26-2026, 11:10 AM
      0 responses
      22 views
      0 reactions
      Last Post SEQadmin2  
      Started by SEQadmin2, 06-17-2026, 06:09 AM
      0 responses
      55 views
      0 reactions
      Last Post SEQadmin2  
      Working...