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  • conform SNPs

    hi, everyone. To find mutation information between two bacteria, especially SNPs, we sequenced mutated strain by SOLEXA. I assembled the genome and compared with genome of WT, got some SNPs. in additional, I use novoalign and MAQ to align short reads to reference and got some SNPs. but the results from compare between genomes are not included in align results. because alignment always gave results including more negative SNPs, and I believe the SNPs through compare genome are more accurate. thanks.

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