Help for analysis

[kerat]

Hello,
I am a beginner on genomic analysis. I have a strain of acinetobacter xdr (resistant to colistin by a phenotypic test) and then I realized a complete genome sequencing followed by a Novo assembly and when I used the databases Resfinder and Caard I do not find any known gene for resistance to colistin. Can you help me with a solution to detect a colistin resistant gene. Thank you.

[Bukowski]

Try antismash: http://antismash.secondarymetabolites.org/

[kerat]

Thank you Bkowski. It can be used just for identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genomes. But me I want to detect the names of the resistance genes in the whole genome bacterial

[milw]

I like Prokka for a fast, reasonably good general annotation of a new genome:

http://www.vicbioinformatics.com/software.prokka.shtml