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  • dariober
    Senior Member
    • May 2010
    • 311

    #1

    python / HTSeq installation problem

    Hello,

    I'm trying to install the python module HTSeq (HTSeq-0.4.5p1.tar.gz downloaded from http://pypi.python.org/pypi/HTSeq) on our computer cluster (running redhat linux 64bit architecture, and python 2.6.3).

    I came across the following error after 'setup.py build':

    Code:
    tar -xzvf HTSeq-0.4.5p1.tar.gz
    cd HTSeq-0.4.5p1
    python setup.py build
    running build
    running build_py
    running build_ext
    Traceback (most recent call last):
      File "setup.py", line 62, in <module>
        'scripts/htseq-count',
      File "/exports/applications/apps/SL5/python/2.6.3/lib/python2.6/distutils/core.py", line 152, in setup
        dist.run_commands()
      File "/exports/applications/apps/SL5/python/2.6.3/lib/python2.6/distutils/dist.py", line 975, in run_commands
        self.run_command(cmd)
      File "/exports/applications/apps/SL5/python/2.6.3/lib/python2.6/distutils/dist.py", line 995, in run_command
        cmd_obj.run()
      File "/exports/applications/apps/SL5/python/2.6.3/lib/python2.6/distutils/command/build.py", line 134, in run
        self.run_command(cmd_name)
      File "/exports/applications/apps/SL5/python/2.6.3/lib/python2.6/distutils/cmd.py", line 333, in run_command
        self.distribution.run_command(command)
      File "/exports/applications/apps/SL5/python/2.6.3/lib/python2.6/distutils/dist.py", line 995, in run_command
        cmd_obj.run()
      File "build/bdist.linux-x86_64/egg/setuptools/command/build_ext.py", line 46, in run
      File "/exports/applications/apps/SL5/python/2.6.3/lib/python2.6/distutils/command/build_ext.py", line 340, in run
        self.build_extensions()
      File "/exports/applications/apps/SL5/python/2.6.3/lib/python2.6/distutils/command/build_ext.py", line 449, in build_extensions
        self.build_extension(ext)
      File "build/bdist.linux-x86_64/egg/setuptools/command/build_ext.py", line 175, in build_extension
      File "/exports/applications/apps/SL5/python/2.6.3/lib/python2.6/distutils/command/build_ext.py", line 460, in build_extension
        ext_path = self.get_ext_fullpath(ext.name)
      File "/exports/applications/apps/SL5/python/2.6.3/lib/python2.6/distutils/command/build_ext.py", line 633, in get_ext_fullpath
        filename = self.get_ext_filename(modpath[-1])
      File "build/bdist.linux-x86_64/egg/setuptools/command/build_ext.py", line 85, in get_ext_filename
    KeyError: '_HTSeq'
    [dberaldi@frontend02 HTSeq-0.4.5p1]$
    Any idea how to fix it?

    Many thanks in advance!

    Dario

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