Hi there!
I'm currently using Novoalign to map reads for resequencing and after converting with novo2maq continue with the various Maq tools for SNP and indel discovery.
Sometimes I'm facing a strange problem with Maqview. If I open a .map-file it will give me a basically empty display with '---------...' for both consensus and reference sequence.
I do index both consensus and map file using maqindex before:
And then I open the viewer using
In most cases this works fine but sometimes the above described error occurs.
All the other tools work fine on the same .map file and I cannot see any difference between .map files that could explain this error.
Has anyone experienced the same thing or knows about this?
I'm currently using Novoalign to map reads for resequencing and after converting with novo2maq continue with the various Maq tools for SNP and indel discovery.
Sometimes I'm facing a strange problem with Maqview. If I open a .map-file it will give me a basically empty display with '---------...' for both consensus and reference sequence.
I do index both consensus and map file using maqindex before:
Code:
maqindex -i -c consensus.cns all.map
Code:
maqview -c consensus.cns all.map
All the other tools work fine on the same .map file and I cannot see any difference between .map files that could explain this error.
Has anyone experienced the same thing or knows about this?
