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  • uam
    Junior Member
    • Nov 2008
    • 1

    1000 genomes fastq format

    Hi!

    As far as I know there are two fastq-formats:
    -Sanger
    -Illumina

    Does anybody know what fastq-format files from the 1000genomes project (http://www.1000genomes.org/page.php) have? Do the recalibrated files have Sanger format and the none-recalibrated files have Illumina or do they all have Sanger format or all have Illumina format?
  • lh3
    Senior Member
    • Feb 2008
    • 686

    #2
    I think it is the Sanger fastq (I would argue that strictly speaking there is only one fastq format. It is the sanger one). I am not very sure. Maybe you can check whether you can see character "!" in the quality string. If you see it, it is the standard fastq.

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