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  • precious7
    Junior Member
    • May 2017
    • 1

    #1

    problem in biopython code

    Hello to everyone,
    I'm novice in biopython and I've a problem in my code I don't know why. When I try to look for a nutrient with its name it works. But, when I put nutrientsin a list for a sequential search it does not work. This is my code below:
    Code:
    for line in nFile:
        file.append(line)
    
    for elt in file:
        Entrez.email = "[email protected]"
        handle = Entrez.egquery(term="orchid")
        record = Entrez.read(handle)
        handle = Entrez.esearch(db="pubmed", term="orchid[Orgn] AND elt[nutrient]", retmax=5)    
        record = Entrez.read(handle)
        idlist = record["IdList"]
        handle = Entrez.efetch(db="pubmed", id=idlist, rettype="medline", retmode="text")   
        records = Medline.parse(handle)   
        records = list(records)                     
        for record in records:                      
            print("Title:", record.get("TI", "?"))
    I have for example differents results for calcium[nutrient] and elt[nutrient] where elt = calcium for my first test.
    So, I need your help please

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