Unconfigured Ad

Collapse
X
 
  • Time
  • Show
Clear All
new posts
  • s18692001
    Junior Member
    • Apr 2017
    • 3

    #1

    Cummerbund Volcano plot infinite value

    I'm faced with a problem in the volcano plot of CummeRbund. As shown in enclosed file, you could see that there are plenty of infinite dots on the borders and also on the bottom. Is there any method to avoid this problem?

    I've checked some pages, it doesn't work when I put "pseudocount=0.0001" argument in csVolcano function.
    Do you have any advice? Thanks!

    Sincerely,
    Simon
    Attached Files
  • tonup69
    Associate Professor
    • Apr 2011
    • 20

    #2
    Funny Volcano Plots

    I have the same problem, but I also have these long lines across the plot - which make no sense. There is way too much data here as well, that is something I am working on now and has to do with the GTF anf FA files I used for alignments. Any help appreciated. See attached.
    Attached Files

    Comment

    Latest Articles

    Collapse

    • SEQadmin2
      Multiomic Liquid Biopsy: What DNA/RNA Panels Reveal That DNA Alone Can’t
      by SEQadmin2



      Tumors contain complex mixtures of cell populations that evolve in response to treatment and host-specific factors. Tissue biopsies provide only static snapshots of a tumor’s state. But what if we could follow that evolution over time using a minimally invasive technique?

      Liquid biopsies can detect tumor-derived material circulating in the bloodstream, providing a way to study treatment response, detect emerging resistance, and discover new biomarkers. Circulating
      ...
      10-14-2026, 09:55 AM
    • SEQadmin2
      New Genomics Technologies Take Aim at Long-Standing Limits
      by SEQadmin2


      Researchers using sequencing and genomics tools often have to make trade-offs. They can choose between speed or scale, short reads or long-range information, or targeted panels or a view of the whole transcriptome. New technologies that have been released this year are built to address those tough choices.

      We asked six companies the same four questions to learn about their latest products. The new technologies bring a lot to the table, including rethinking sequencing
      ...
      09-28-2026, 10:25 AM

    ad_right_rmr

    Collapse

    News

    Collapse

    Topics Statistics Last Post
    Started by SEQadmin2, Yesterday, 11:13 AM
    0 responses
    16 views
    0 reactions
    Last Post SEQadmin2  
    Started by SEQadmin2, Yesterday, 10:48 AM
    0 responses
    18 views
    0 reactions
    Last Post SEQadmin2  
    Started by SEQadmin2, 10-15-2026, 10:52 AM
    0 responses
    35 views
    0 reactions
    Last Post SEQadmin2  
    Started by SEQadmin2, 10-14-2026, 05:39 AM
    0 responses
    42 views
    0 reactions
    Last Post SEQadmin2  
    Working...