Hi,
When I run BWA without specifying a "q" value (which defaults to 0 as I understand it from the manual), I would not expect any trimming to occur.
However, the resulting alignments have lots of soft-clippings at the edges. Aren't these trimmings?
Thanks!
When I run BWA without specifying a "q" value (which defaults to 0 as I understand it from the manual), I would not expect any trimming to occur.
However, the resulting alignments have lots of soft-clippings at the edges. Aren't these trimmings?
Thanks!
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