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  • SubodhTambat
    Junior Member
    • Oct 2013
    • 8
    #1

    Fungal Metagenome using UNITE database

    Hello all..

    I am using UNITE database for fungal metagenome analysis and I have few queries.

    1.What is the Species Hypotheses (SH) threshold (0.5 to 3.0%) used in UNITE and if we have to change the threshold how can we change it ?
    2.Is there any change in annotation if we change the threshold ?
    3.On what basis the default (1.5%) is defined ?
    4.What is the optimal threshold that can be used to analyse the fungal metagenome data ?

    Thank you in advance.
    Tags: None
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