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  • adding extra factors to topGO object

    Hello,

    I have created a topGO object using a list of DMRs from BS-seq analysis and wondered if anyone knew of a good way to add whether it is a hypo or hyper methylated region. Can you just add this as a factor? Or would it just be easier to split the DMRs into hypo and hyper groups and perform the analysis separately? I know there is a method to add p-values as a factor so this should be simple in theory but I'm not sure the software lends itself to this analysis.

    Any help is appreciated.

    Thanks,
    Marianne

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