Does anyone know of a tool that will allow me to filter an Illumina VCF file and output the results as a VCF file. All the tools I've looked at so far give the output in csv or similar file formats. Hopefully a simple to use tool for a bioinformatics beginner.
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vcftools takes a vcf file as input and outputs a filtered vcf file.
Providing nextRAD genotyping and PacBio sequencing services. http://snpsaurus.com
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NGS has revolutionized clinical microbiology by offering new ways to identify and surveil pathogens without prior knowledge of the target. One popular approach is 16S rRNA and ITS amplicon sequencing, which targets specific microbial markers. But studies are increasingly incorporating shotgun metagenomics, a technique that sequences all DNA from a sample without targeting specific microbial markers. This approach allows more detailed taxonomic classification,...10-30-2026, 06:46 AM
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