Does anyone know of a tool that will allow me to filter an Illumina VCF file and output the results as a VCF file. All the tools I've looked at so far give the output in csv or similar file formats. Hopefully a simple to use tool for a bioinformatics beginner.
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vcftools takes a vcf file as input and outputs a filtered vcf file.
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The complexity of cancer is clearly demonstrated in the diverse ecosystem of the tumor microenvironment (TME). The TME is made up of numerous cell types and its development begins with the changes that happen during oncogenesis. “Genomic mutations, copy number changes, epigenetic alterations, and alternative gene expression occur to varying degrees within the affected tumor cells,” explained Andrea O’Hara, Ph.D., Strategic Technical Specialist at Azenta. “As...-
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