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  • bioinformatic question?

    Hi
    I have a large file like this:
    chr14 refGene mRNA 82619610 82772576 . - . ID=ENSSSCT00000011302;Name=KCNMA1;Parent=ENSSSCG00000010325
    chr14 refGene mRNA 83630626 83630706 . - . ID=ENSSSCT00000011304;Name=;Parent=ENSSSCG00000010326
    chr14 refGene mRNA 83778643 83836718 . - . ID=ENSSSCT00000011305;Name=POLR3A;Parent=ENSSSCG00000010327
    chr14 refGene mRNA 83839069 83846368 . + . ID=ENSSSCT00000011306;Name=RPS24;Parent=ENSSSCG00000010328
    chr14 refGene mRNA 84802334 85175686 . + . ID=ENSSSCT00000011307;Name=ZMIZ1;Parent=ENSSSCG00000010329
    chr14 refGene mRNA 85205810 85212642 . + . ID=ENSSSCT00000011308;Name=PPIF;Parent=ENSSSCG00000010330
    and I want to remove the last part of each line (from " ;parent till end of line").Which command in linux can do that? Thanks in advance
    reza

  • #2
    Hello

    Try :
    Code:
    cut -f 1,2 -d ";" file.in > file.out
    Fred

    Comment


    • #3
      Hi Fred,
      It works. Thanks so much.
      reza

      Comment

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