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Searching unkwown consensus sequences
Hello guys!
I’m looking for a software that can find unknown consensus sequences between some promoters regulated from the same transcriptional factor.
I’ll try to explain my problem in details:
We are studying a transcriptional factor and we know that the deletion of this gene causes the deregulation of some other genes.
We think that this transcriptional factor binds a common consensus sequence on the promoters of the deregulated genes but we don’t know anything about this consesus. We just know that, probably, there is a common consensus sequence in these promoters.
Now what we want to do is to allineate our promoters sequences to find some short (6-12 bp) common sequences that could be the transcriptional factor consensus.
Thanks in advance!
I’m looking for a software that can find unknown consensus sequences between some promoters regulated from the same transcriptional factor.
I’ll try to explain my problem in details:
We are studying a transcriptional factor and we know that the deletion of this gene causes the deregulation of some other genes.
We think that this transcriptional factor binds a common consensus sequence on the promoters of the deregulated genes but we don’t know anything about this consesus. We just know that, probably, there is a common consensus sequence in these promoters.
Now what we want to do is to allineate our promoters sequences to find some short (6-12 bp) common sequences that could be the transcriptional factor consensus.
Thanks in advance!