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  • Busco does not work

    Hi everyone, does someone know why the Busco's website doesn't work?
    Thanks you
    busco.ezlab.org

  • #2
    It's down.

    Assessing genome assembly and annotation completeness with Benchmarking Universal Single-Copy Orthologs (BUSCO)


    You can find links to the code and datasets there.

    Comment


    • #3
      Originally posted by Bukowski View Post
      It's down.

      Assessing genome assembly and annotation completeness with Benchmarking Universal Single-Copy Orthologs (BUSCO)


      You can find links to the code and datasets there.
      Thanks uoi Kukowski i found it thanks to you.
      Now i'm having a probleme, I don't know if you know a solution?

      I used this code:
      python run_BUSCO.py -i ACG-0042-scaffold.fa -o busco_output -l hymenoptera_odb9 -m geno

      And I got this message error:

      ERROR No section [busco] found in /home/ivan/Bureau/STAGE/BUSCO/Busco/scripts/../config/config.ini. Please make sure both the file and this section exist, see userguide.

      Do you know what is the probleme?

      Comment


      • #4
        So, I had this problem- it could be due to two things:
        (1) By default BUSCO has a file called
        Code:
        /path-to-busco-installation/busco/config/config.ini.default
        . That file needs to modified and renamed as
        Code:
        /path-to-busco-installation/busco/config/config.ini
        .

        (2) You may have solved problem (1), but you removed the lines between sections. For example,

        BUSCO will give that error if you have:

        Code:
        [tblastn]
        # path to tblastn
        path = /usr/bin/
        [makeblastdb]
        # path to makeblastdb
        path = /usr/bin/
        But no error with the following:

        Code:
        [tblastn]
        # path to tblastn
        path = /usr/bin/
        
        [makeblastdb]
        # path to makeblastdb
        path = /usr/bin/

        Comment

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