Hello everybody,
hope, someone has a solution for the following problem:
I want to establish FishingCNV for analysis of CNVs in exomic data. All the pipeline runs good so far unless the last step. When typing
I get the following warnings and execution is halted:
R is properly installed (v3.2.3) as is the DNAcopy package.
The problem seems to be something with the sample file.
Has anbody have an idea?
Best
hope, someone has a solution for the following problem:
I want to establish FishingCNV for analysis of CNVs in exomic data. All the pipeline runs good so far unless the last step. When typing
Code:
Rscript FishingCNV.R -c controls.ctr.complete -v -s ./sample.rpkm -o ./ -pca
Error occured in plotting function. Program will proceed without the offending plot.
Execution halted.
Execution halted.
The problem seems to be something with the sample file.
Has anbody have an idea?
Best
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