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Hello I'm a college student working on a research problem that I've been stuck on.
I am trying to reformat data into some form readable by haploview in order to display individual SNP's with a variety of weight values. The data I'm working with has a column for individual patients, a row for SNP's, and then a numerical weight value when cross referencing an individual with an SNP.
Example:
|||||||||SNP1 SNP2
Indiviual 3 ||||| 0
I was wondering if I would be able to reformat this data in a way that it would be readable and meaningful through Haploview (which as I understand is traditionally for analyzing how paired snp's can be relevant to a certain allele). I personally have been unsuccessful in writing a script to convert the data I was given into a format readable by Haploview while also retaining the meaning of the data. At this point it seems as though I should be looking at different tools or formats to map the data, but I was hoping I may have overlooked something that would allow me to use Haploview in this way.
I am trying to reformat data into some form readable by haploview in order to display individual SNP's with a variety of weight values. The data I'm working with has a column for individual patients, a row for SNP's, and then a numerical weight value when cross referencing an individual with an SNP.
Example:
|||||||||SNP1 SNP2
Indiviual 3 ||||| 0
I was wondering if I would be able to reformat this data in a way that it would be readable and meaningful through Haploview (which as I understand is traditionally for analyzing how paired snp's can be relevant to a certain allele). I personally have been unsuccessful in writing a script to convert the data I was given into a format readable by Haploview while also retaining the meaning of the data. At this point it seems as though I should be looking at different tools or formats to map the data, but I was hoping I may have overlooked something that would allow me to use Haploview in this way.
