snoSeekerNGS: Discovering snoRNAs from pooled deep-sequencing data

[yjhua2110]

Dear All,

We introduce a software package, snoSeekerNGS, for discovering snoRNAs from pooled deep sequencing data. snoSeekerNGS is an improved version of our snoSeeker.

SnoSeekerNGS is freely available from the following URL: http://deepbase.sysu.edu.cn/SnoSeekerNGS.php. Choose the appropriate platform for a binary distribution or a graphical user interface (GUI) distribution.

To enhance the quality of microRNA prediction softwares, snoSeekerNGS can serve as rapid and pre-processing filters in excluding snoRNAs (C/D snoRNAs and H/ACA snoRNAs).

snoSeekerNGS also can be used to explore microRNA-like snoRNAs and sno-derived small RNAs (sdRNAs).



This is the first version of snoSeekerNGS. We look forward to your feedback.

Thanks!

[nis]

Problem with the methylation file

Hi,

I'm woorking on a project to identify snoRNAs with the WGS and i'm using the snoseeker programm but it doesn't accept a methylation file in format fasta, i tried to organize it as that in the "CE_all_methylation file" but it doesn't woork, i can't register it with sites extention. Could you explain me how it should be done?

Thank you