Unconfigured Ad

Collapse
X
 
  • Time
  • Show
Clear All
new posts
  • dicty
    Member
    • Nov 2010
    • 28

    #1

    Bowtie and samtools questions

    I'm new in sequencing analysis and have a couple of questions to ask.

    1. I’m trying to use bowtie-inspect to reconstruct fasta file from the BOWTIE index, but couldn’t get anything. I’m using 12.7 version.

    Here is the command:
    ./bowtie-inspect e_coli

    Then I got the following output, but nothing else:
    Command: ./bowtie-inspect e_coli

    Why I cannot run bowtie-inspect? Is there anything wrong?

    2. I installed samtools and try to produce a .fai file with "samtools faidx", but I got the following errors.

    ./samtools: No such file or directory
    or
    samtools: command not found

    How do I run samtools? Is there anything wrong I did?

    Thanks a lot!

Latest Articles

Collapse

  • SEQadmin2
    Beyond CRISPR/Cas9: Understand, Choose, and Use the Right Genome Editing Tool
    by SEQadmin2



    CRISPR/Cas9 sparked the gene editing revolution for both research and therapeutics.1 But this system still showed severe issues that limited its applications. The most prominent were the heavy reliance on PAM sequences, delivery limitations, double-stranded breaks that prompt unintended edits and cell death, and editing inefficiency (both in targeting and in knock-in reliability).

    Despite this, “CRISPR helped turn genome editing from a specialized technique into
    ...
    07-31-2026, 11:01 AM
  • SEQadmin2
    Proteomic Platforms: How to Choose the Right Analytical Strategy to Improve Detection and Clinical Applications
    by SEQadmin2


    Proteomics platforms are evolving rapidly, with advances in mass spectrometry and affinity-based approaches expanding what researchers can detect and at what scale. As the field moves toward deeper proteome coverage and clinical applications, scientists face an increasingly complex landscape of tools. This article will explore how researchers are navigating these choices to find the right platform for their work.

    The systematic characterization of the human proteome has
    ...
    07-20-2026, 11:48 AM

ad_right_rmr

Collapse

News

Collapse

Topics Statistics Last Post
Started by SEQadmin2, 08-06-2026, 07:41 AM
0 responses
23 views
0 reactions
Last Post SEQadmin2  
Started by SEQadmin2, 08-03-2026, 10:13 AM
0 responses
35 views
0 reactions
Last Post SEQadmin2  
Started by SEQadmin2, 07-31-2026, 02:55 AM
0 responses
43 views
0 reactions
Last Post SEQadmin2  
Started by SEQadmin2, 07-24-2026, 12:17 PM
0 responses
26 views
0 reactions
Last Post SEQadmin2  
Working...