Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • Bukowski
    replied
    Some minION sequencing?

    There's nothing wrong with that number of contigs from a 2x250 MiSeq run.

    Leave a comment:


  • szy0931
    replied
    Thak you very much!
    I have one set paired (2 x250) Illumnia MiSeq data from Salmonella.
    They look good by FastaQC
    I did Unicycler assembling but I did not get a whole genome.
    The longest contig is 446213 and totally I got 59 contigs longer than 500 bp.
    What can I do next?

    Leave a comment:


  • Bukowski
    replied
    Yes, because it acts as an optimiser for Spades.. which is perfectly happy with just short read data.

    Leave a comment:


  • szy0931
    started a topic Unicycler

    Unicycler

    I know Unicycler is specialised for bacterial genome assembling from hybrid of short and long reads.
    But, is Unicycler also good for bacterial genome assembling only from short reads such as from Illumina MiSeq

Latest Articles

Collapse

  • seqadmin
    The Impact of AI in Genomic Medicine
    by seqadmin



    Artificial intelligence (AI) has evolved from a futuristic vision to a mainstream technology, highlighted by the introduction of tools like OpenAI's ChatGPT and Google's Gemini. In recent years, AI has become increasingly integrated into the field of genomics. This integration has enabled new scientific discoveries while simultaneously raising important ethical questions1. Interviews with two researchers at the center of this intersection provide insightful perspectives into...
    02-26-2024, 02:07 PM
  • seqadmin
    Multiomics Techniques Advancing Disease Research
    by seqadmin


    New and advanced multiomics tools and technologies have opened new avenues of research and markedly enhanced various disciplines such as disease research and precision medicine1. The practice of merging diverse data from various ‘omes increasingly provides a more holistic understanding of biological systems. As Maddison Masaeli, Co-Founder and CEO at Deepcell, aptly noted, “You can't explain biology in its complex form with one modality.”

    A major leap in the field has
    ...
    02-08-2024, 06:33 AM

ad_right_rmr

Collapse

News

Collapse

Topics Statistics Last Post
Started by seqadmin, Today, 06:12 AM
0 responses
13 views
0 likes
Last Post seqadmin  
Started by seqadmin, 02-23-2024, 04:11 PM
0 responses
67 views
0 likes
Last Post seqadmin  
Started by seqadmin, 02-21-2024, 08:52 AM
0 responses
70 views
0 likes
Last Post seqadmin  
Started by seqadmin, 02-20-2024, 08:57 AM
0 responses
61 views
0 likes
Last Post seqadmin  
Working...
X