Some minION sequencing?
There's nothing wrong with that number of contigs from a 2x250 MiSeq run.
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Thak you very much!
I have one set paired (2 x250) Illumnia MiSeq data from Salmonella.
They look good by FastaQC
I did Unicycler assembling but I did not get a whole genome.
The longest contig is 446213 and totally I got 59 contigs longer than 500 bp.
What can I do next?
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Yes, because it acts as an optimiser for Spades.. which is perfectly happy with just short read data.
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