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  • zhangju
    Member
    • May 2011
    • 18

    Integrate Interproscan for Augustus annotation

    I have finished Augustus gene model annotation using BRAKER, the outputs files are augustus.aa, augustus.gtf and augustus.gff.

    For functional annotation, I took augustus.aa to run IntroproScan.sh. The output files are gff3, tsv and xml. I do have GO, pathways output.

    My question: How could I merge (integrate) Introproscan annotated information into august gft/gff file? Also How could I map to EC number?

    Thanks,


    Justin

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