Hi
I have four files like this:
chr7 119890085 119890581 HWI-EA332:7:99:1055:1791#0/2|junc=4 1134.79784731 - 119890085 119890581 0 2 40,40, 0,456,
chr7 131927760 131927911 HWI-EA332:7:97:1573:1761#0/2|junc=3 1103.60361882 - 131927760 131927911 0 2 35,25, 0,126,
chr7 34890329 35007820 HWI-EA332:7:70:1515:1957#0/2|junc=23 1345.89320621 - 34890329 35007820 0 2 40,36, 0,117455,
chr7 66515766 66516856 HWI-EA332:7:20:253:830#0/2|junc=5 1164.80877517 - 66515766 66516856 0 2 24,40, 0,1050,
chr7 82356545 82358428 HWI-EA332:7:81:13:1101#0/2|junc=4 1177.99357098 + 82356545 82358428 0 2 34,27, 0,1856,
I want to concatenate these file and also be a unique file.(not duplicate).
Actually I did but first cut the first 3 columns and then use cat and sort unique command and it was ok, however I wanted this output bed file to upload in ensembl but the result is not ok so I don't want to cut some part of columns. Anyone knows how can concatenate and sort as a unique those files?Thanks in advance
I have four files like this:
chr7 119890085 119890581 HWI-EA332:7:99:1055:1791#0/2|junc=4 1134.79784731 - 119890085 119890581 0 2 40,40, 0,456,
chr7 131927760 131927911 HWI-EA332:7:97:1573:1761#0/2|junc=3 1103.60361882 - 131927760 131927911 0 2 35,25, 0,126,
chr7 34890329 35007820 HWI-EA332:7:70:1515:1957#0/2|junc=23 1345.89320621 - 34890329 35007820 0 2 40,36, 0,117455,
chr7 66515766 66516856 HWI-EA332:7:20:253:830#0/2|junc=5 1164.80877517 - 66515766 66516856 0 2 24,40, 0,1050,
chr7 82356545 82358428 HWI-EA332:7:81:13:1101#0/2|junc=4 1177.99357098 + 82356545 82358428 0 2 34,27, 0,1856,
I want to concatenate these file and also be a unique file.(not duplicate).
Actually I did but first cut the first 3 columns and then use cat and sort unique command and it was ok, however I wanted this output bed file to upload in ensembl but the result is not ok so I don't want to cut some part of columns. Anyone knows how can concatenate and sort as a unique those files?Thanks in advance
