problems installing package goseq

[PFS]

I have been having trouble installing the package goseq. I followed the instructions, but got the following message:

> source("http://bioconductor.org/biocLite.R")
> biocLite("goseq",dependencies=TRUE)
Using R version 2.10.1, biocinstall version 2.5.11.
Installing Bioconductor version 2.5 packages:
[1] "goseq"
Please wait...

Warning message:
In getDependencies(pkgs, dependencies, available, lib) :
package ‘goseq’ is not available

Any suggestions? I am not particularly familiar with the language R, so I don't know how to dig deeper to solve the issue.

Thanks!

[MDY]

Hi PFS,

goseq requires a newer version of R than the one you are using. If you update to the latest version and try again everything should work.

Cheers,

Matt

[chknbio]

I am also having a problem installing goseq.


Warning messages:
1: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
installation of package ‘XML’ had non-zero exit status
2: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
installation of package ‘RCurl’ had non-zero exit status
3: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
installation of package ‘biomaRt’ had non-zero exit status
4: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
installation of package ‘rtracklayer’ had non-zero exit status
5: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
installation of package ‘GenomicFeatures’ had non-zero exit status
6: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
installation of package ‘geneLenDataBase’ had non-zero exit status
7: In install.packages(pkgs = pkgs, lib = lib, repos = repos, ...) :
installation of package ‘goseq’ had non-zero exit status
8: installed directory not writable, cannot update packages 'foreign', 'MASS',
'mgcv', 'nlme', 'survival'
> library(goseq)
Error in library(goseq) : there is no package called ‘goseq’
>

Could you please help me to find a resolution.

Thanks.