3'utr

[NicoBxl]

Hi,

Where can I find the 3'UTR sequences of all the genes of the human ?

Thanks a lot,

N.

[steven]

try this: UCSC table browser, human genome, refseq/ensembl/ucsc annotation track, select "BED" output format and after clicking on "get output" click on 3'UTR.

[jana]

Hi,
you can also try and use Ensembl and BioMart:

http://www.ensembl.org/biomart/martview//3164dfc90c226c4be8727287171c245f

or http://www.biomart.org/

In brief,
first select "Ensembl genes 60" as your database and then Homo Sapiens as your organism.
Second, since you are trying to export a lot of data it is better to export them chromosome by chromosome. Just select Filters (top left), then "Region" and the chromosome you want.
Third, under "Attributes" (top left) select "Sequences", click "+" to open the sequences available and select "3'UTR".
Then click "Results" and export to compressed file.

BioMart is handy for any batch queries and you can find more about BioMart here:

http://www.ensembl.org/info/data/biomart.html

Ensembl helpdesk

[Torst]

Where can I find the 3'UTR sequences of all the genes of the human ?

Try http://utrdb.ba.itb.cnr.it/ :: Download :: Flat file :: HUMAN :: 3'UTR

[steven]

Where can I find the 3'UTR sequences of all the genes of the human ?

At the end of the genes, after the stop codon.

[steven]

At the end of the genes, after the stop codon.

Sorry, i couldn't help it.
Anyway, you should be fine with the previous answers -let me know otherwise.

[dan]

At the end of the genes, after the stop codon.

lol... I think you can also use BioMart to get these.