Hi,
Where can I find the 3'UTR sequences of all the genes of the human ?
Thanks a lot,
N.
Where can I find the 3'UTR sequences of all the genes of the human ?
Thanks a lot,
N.
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try this: UCSC table browser, human genome, refseq/ensembl/ucsc annotation track, select "BED" output format and after clicking on "get output" click on 3'UTR. -
Hi,
you can also try and use Ensembl and BioMart:
http://www.ensembl.org/biomart/martv...727287171c245f
or http://www.biomart.org/
In brief,
first select "Ensembl genes 60" as your database and then Homo Sapiens as your organism.
Second, since you are trying to export a lot of data it is better to export them chromosome by chromosome. Just select Filters (top left), then "Region" and the chromosome you want.
Third, under "Attributes" (top left) select "Sequences", click "+" to open the sequences available and select "3'UTR".
Then click "Results" and export to compressed file.
BioMart is handy for any batch queries and you can find more about BioMart here:
http://www.ensembl.org/info/data/biomart.html
Ensembl helpdeskComment
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Try http://utrdb.ba.itb.cnr.it/ :: Download :: Flat file :: HUMAN :: 3'UTROriginally posted by NicoBxl View PostComment
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Sorry, i couldn't help it.Originally posted by steven View Post
Anyway, you should be fine with the previous answers -let me know otherwise.Comment
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