Tweet
Hi,
Where can I find the 3'UTR sequences of all the genes of the human ?
Thanks a lot,
N.
Where can I find the 3'UTR sequences of all the genes of the human ?
Thanks a lot,
N.
-
-
try this: UCSC table browser, human genome, refseq/ensembl/ucsc annotation track, select "BED" output format and after clicking on "get output" click on 3'UTR. -
Hi,
you can also try and use Ensembl and BioMart:
http://www.ensembl.org/biomart/martv...727287171c245f
or http://www.biomart.org/
In brief,
first select "Ensembl genes 60" as your database and then Homo Sapiens as your organism.
Second, since you are trying to export a lot of data it is better to export them chromosome by chromosome. Just select Filters (top left), then "Region" and the chromosome you want.
Third, under "Attributes" (top left) select "Sequences", click "+" to open the sequences available and select "3'UTR".
Then click "Results" and export to compressed file.
BioMart is handy for any batch queries and you can find more about BioMart here:
http://www.ensembl.org/info/data/biomart.html
Ensembl helpdeskComment
-
Try http://utrdb.ba.itb.cnr.it/ :: Download :: Flat file :: HUMAN :: 3'UTROriginally posted by NicoBxl View PostComment
-
-
Sorry, i couldn't help it.Originally posted by steven View Post
Anyway, you should be fine with the previous answers -let me know otherwise.Comment
-
Amplicon sequencing is a targeted approach that allows researchers to investigate specific regions of the genome. This technique is routinely used in applications such as variant identification, clinical research, and infectious disease surveillance. The amplicon sequencing process begins by designing primers that flank the regions of interest. The DNA sequences are then amplified through PCR (typically multiplex PCR) to produce amplicons complementary to the targets. RNA targets...03-21-2023, 01:49 PM -
Targeted sequencing is an effective way to sequence and analyze specific genomic regions of interest. This method enables researchers to focus their efforts on their desired targets, as opposed to other methods like whole genome sequencing that involve the sequencing of total DNA. Utilizing targeted sequencing is an attractive option for many researchers because it is often faster, more cost-effective, and only generates applicable data. While there are many approaches...03-10-2023, 05:31 AM
Comment