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mard

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Join Date: Jan 2010

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Insert size for Pindel

12-15-2010, 09:08 PM

For indel detection with Pindel insert size needs to be specified for the sam2pindel step.
Is it recommended to use something like Picard's CollectInsertSizeMetrics to determine the mean insert size for all reads in the BAM file and then supply that value to Pindel?
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