Hello,
We have just released Goby 1.9. This version now provides APIs to access only a slice of an alignment, where the slice is defined by the alignment entries contained between two position on reference sequences.
This new feature makes it possible to parallelize sequence variant discovery on a grid of computers by running individual jobs on different slices of alignments of interest. Most analyses can be parallelized with this strategy, which is simpler than decomposing an analysis to fit a MapReduce paradigm.
This version also includes an improved C++ and C API with support for writing paired-end alignment. The C API released is the one needed to compile the version of BWA with Goby support (which supports with paired-end alignments). A complete list of improvements and bug fixes is given in the change log online.
The growing lists of Goby tools can be seen at http://campagnelab.org/software/goby...ntation/modes/
As usual, Goby 1.9 can be downloaded from our web site.
We have just released Goby 1.9. This version now provides APIs to access only a slice of an alignment, where the slice is defined by the alignment entries contained between two position on reference sequences.
This new feature makes it possible to parallelize sequence variant discovery on a grid of computers by running individual jobs on different slices of alignments of interest. Most analyses can be parallelized with this strategy, which is simpler than decomposing an analysis to fit a MapReduce paradigm.
This version also includes an improved C++ and C API with support for writing paired-end alignment. The C API released is the one needed to compile the version of BWA with Goby support (which supports with paired-end alignments). A complete list of improvements and bug fixes is given in the change log online.
The growing lists of Goby tools can be seen at http://campagnelab.org/software/goby...ntation/modes/
As usual, Goby 1.9 can be downloaded from our web site.