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  • markiv
    Junior Member
    • Nov 2018
    • 1
    #1

    Has anyone used Pathoscope pipeline for wgs?

    Tool link here: https://sourceforge.net/p/pathoscope/wiki/Home/

    I'm trying to process some WGS fastq files. I'm not clear on on the process as a whole. I have run PathoQC to derep and I now have dereplicated fastq files. I'm not sure how I figure out my TaxonID for PathoLib.

    I'm interested in identifying bacteria and distributions of the bacteria. How do I go about that?
    Tags: wgs
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