Tool link here: https://sourceforge.net/p/pathoscope/wiki/Home/
I'm trying to process some WGS fastq files. I'm not clear on on the process as a whole. I have run PathoQC to derep and I now have dereplicated fastq files. I'm not sure how I figure out my TaxonID for PathoLib.
I'm interested in identifying bacteria and distributions of the bacteria. How do I go about that?
I'm trying to process some WGS fastq files. I'm not clear on on the process as a whole. I have run PathoQC to derep and I now have dereplicated fastq files. I'm not sure how I figure out my TaxonID for PathoLib.
I'm interested in identifying bacteria and distributions of the bacteria. How do I go about that?