export2sam.pl was developed when CASAVA was not formally released (GApipeline<1.0). I do not have access to export files any more and I cannot fix the problem. Is anyone interested in maintaining this script? Thanks in advance.
In addition, I would also recommend to remap your reads with bwa/novoalign if you have the capacity. I am not familiar with the latest version of eland. But the old version was not as accurate as the best 3rd-party aligners.
In addition, I would also recommend to remap your reads with bwa/novoalign if you have the capacity. I am not familiar with the latest version of eland. But the old version was not as accurate as the best 3rd-party aligners.
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