Convert MAQ or Bowtie output to Vmatch

[scirocco]

Hi
Im going to use a pipeline which depend on the output from vmatch but instead I would use MAQ or Bowtie do the alignment. The output from vmatch looks like this where sbjct= reference sequence, query= my query sequence and (" ") is the corresponding value I found matching the output from MAQ

sbjct_length (?)
sbjct_id ("Chromosome")
sbjct_relative_pos ( "Position")
match_type : -direct or palindronic ("Strand")
query_length ("length of the read"
query_id ("read name")
query_relative_pos (?)
match_distance (?)
match_evalue (?)
match_score (?)
match_identity (?)


Can anyone help me how I found the rest of the values or maybe know a program what can convert output from MAQ or Bowtie into vmatch?