galaxy error: No module named galaxy_utils.sequence.fastq

[gfmgfm]

Hello all,

We installed local galaxy and wanted to use a command, such as:

python /usr/local/src/galaxy-central.orig/tools/fastq/fastq_groomer.py

but it gives the following message:

File "/usr/local/src/galaxy-central.orig/tools/fastq/fastq_groomer.py", line 3, in <module>
from galaxy_utils.sequence.fastq import fastqReader, fastqAggregator, fastqWriter
ImportError: No module named galaxy_utils.sequence.fastq

Does anyone knows what could possibly be the problem?

[Dannon]

Galaxy's command line tools can be run outside of Galaxy itself, but you will need to make sure the lib directory is on your PYTHONPATH. In your case, "/usr/local/src/galaxy-central.orig/lib/"

[gfmgfm]

thanks a lot!