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  • failed annotating the example vcf file in the installation folder of VCFtools

    Dear SEQanswers,

    I need your helps on fixing problems I faced when annotating the
    example vcf file (annotate.txt) in the installation folder of
    VCFtools. I have listed the commands I used and the results I got.

    Also, I want to know what type of annotation information file it
    (VCFtools) supported, gff file or others?

    cat annotate-test.vcf | vcf-annotate -a annotate.txt -d
    key=INFO,ID=ANN,Number=1,Type=Integer,Description='My custom
    annotation' | bgzip -c > annout.vcf.gz
    Can't use an undefined value as an ARRAY reference at
    /ebio/abt6_projects/backup/solexa_tools/VCFtools/bin/vcf-annotate line
    134.

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