Unconfigured Ad

Collapse
X
 
  • Time
  • Show
Clear All
new posts
  • jianfeng.mao
    Member
    • Dec 2010
    • 12

    #1

    failed annotating the example vcf file in the installation folder of VCFtools

    Dear SEQanswers,

    I need your helps on fixing problems I faced when annotating the
    example vcf file (annotate.txt) in the installation folder of
    VCFtools. I have listed the commands I used and the results I got.

    Also, I want to know what type of annotation information file it
    (VCFtools) supported, gff file or others?

    cat annotate-test.vcf | vcf-annotate -a annotate.txt -d
    key=INFO,ID=ANN,Number=1,Type=Integer,Description='My custom
    annotation' | bgzip -c > annout.vcf.gz
    Can't use an undefined value as an ARRAY reference at
    /ebio/abt6_projects/backup/solexa_tools/VCFtools/bin/vcf-annotate line
    134.

Latest Articles

Collapse

  • SEQadmin2
    Multiomic Liquid Biopsy: What DNA/RNA Panels Reveal That DNA Alone Can’t
    by SEQadmin2



    Tumors contain complex mixtures of cell populations that evolve in response to treatment and host-specific factors. Tissue biopsies provide only static snapshots of a tumor’s state. But what if we could follow that evolution over time using a minimally invasive technique?

    Liquid biopsies can detect tumor-derived material circulating in the bloodstream, providing a way to study treatment response, detect emerging resistance, and discover new biomarkers. Circulating
    ...
    10-14-2026, 09:55 AM
  • SEQadmin2
    New Genomics Technologies Take Aim at Long-Standing Limits
    by SEQadmin2


    Researchers using sequencing and genomics tools often have to make trade-offs. They can choose between speed or scale, short reads or long-range information, or targeted panels or a view of the whole transcriptome. New technologies that have been released this year are built to address those tough choices.

    We asked six companies the same four questions to learn about their latest products. The new technologies bring a lot to the table, including rethinking sequencing
    ...
    09-28-2026, 10:25 AM

ad_right_rmr

Collapse

News

Collapse

Topics Statistics Last Post
Started by SEQadmin2, Today, 11:13 AM
0 responses
10 views
0 reactions
Last Post SEQadmin2  
Started by SEQadmin2, Today, 10:48 AM
0 responses
8 views
0 reactions
Last Post SEQadmin2  
Started by SEQadmin2, 10-15-2026, 10:52 AM
0 responses
32 views
0 reactions
Last Post SEQadmin2  
Started by SEQadmin2, 10-14-2026, 05:39 AM
0 responses
40 views
0 reactions
Last Post SEQadmin2  
Working...