Hi, I'm just wondering why the genomic position skips from 6925 to 6957 in the mpileup output. Is it just a way to compress the file and not rewrite the exact same output again? Therefore, can I assume from 6925 to 6956 the number of reads covering the site is the same as that at 6925?
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Last edited by bobjoe; 03-11-2019, 08:47 PM.
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NGS has revolutionized clinical microbiology by offering new ways to identify and surveil pathogens without prior knowledge of the target. One popular approach is 16S rRNA and ITS amplicon sequencing, which targets specific microbial markers. But studies are increasingly incorporating shotgun metagenomics, a technique that sequences all DNA from a sample without targeting specific microbial markers. This approach allows more detailed taxonomic classification,...10-30-2026, 06:46 AM
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