Repeatscout output

fripeki

Junior Member

Join Date: Apr 2019

Posts: 5
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Repeatscout output

05-07-2019, 03:12 AM

hello. I'm using repeatscout. can anyone help me explaining how to read the result produced by the command:
build_lmer_table?
It is not clear to me what does it mean this kind of result:
AAAAAAAAGCGGGA 3 107776875
AAAAAAAATACCCG 4 75256214
CATACATATGTATG 155 121820972
AATTCAATTGAATT 12 125164377
AAAAAAACGTAGAC 9 116691109
ATTCAAGGCTTGAA 13 124791730
AATTCAATCATGCA 3 116945308
AAAAAAACTGTATG 10 83440519
AAAAAAAAGGCGTA 3 41037187
AAAAAAACTTGAAT 7 94493612
CATACATGCATGCA 1065 125671338
CATACATGCTTGAA 7 121799834
AAAAAAATCATGCA 10 95493021
AAAAAAAGTCCAGT 3 125127980
AATTCACATGTATG 7 102505668
AAAAAAAGGGGCTC 3 10107773
AATTCAAGCTTGAA 3 33672150
AAAAAAATGTCCAG 6 95501149
AAAAAAAGCTTGAA 7 117285183
ATTCAATATGTATG 5 70104562
...

Thank you
Tags: repeat element, repeat masker, repeatscout

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