Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • Repeatscout output

    hello. I'm using repeatscout. can anyone help me explaining how to read the result produced by the command:
    build_lmer_table?
    It is not clear to me what does it mean this kind of result:
    AAAAAAAAGCGGGA 3 107776875
    AAAAAAAATACCCG 4 75256214
    CATACATATGTATG 155 121820972
    AATTCAATTGAATT 12 125164377
    AAAAAAACGTAGAC 9 116691109
    ATTCAAGGCTTGAA 13 124791730
    AATTCAATCATGCA 3 116945308
    AAAAAAACTGTATG 10 83440519
    AAAAAAAAGGCGTA 3 41037187
    AAAAAAACTTGAAT 7 94493612
    CATACATGCATGCA 1065 125671338
    CATACATGCTTGAA 7 121799834
    AAAAAAATCATGCA 10 95493021
    AAAAAAAGTCCAGT 3 125127980
    AATTCACATGTATG 7 102505668
    AAAAAAAGGGGCTC 3 10107773
    AATTCAAGCTTGAA 3 33672150
    AAAAAAATGTCCAG 6 95501149
    AAAAAAAGCTTGAA 7 117285183
    ATTCAATATGTATG 5 70104562
    ...

    Thank you

Latest Articles

Collapse

  • seqadmin
    Strategies for Sequencing Challenging Samples
    by seqadmin


    Despite advancements in sequencing platforms and related sample preparation technologies, certain sample types continue to present significant challenges that can compromise sequencing results. Pedro Echave, Senior Manager of the Global Business Segment at Revvity, explained that the success of a sequencing experiment ultimately depends on the amount and integrity of the nucleic acid template (RNA or DNA) obtained from a sample. “The better the quality of the nucleic acid isolated...
    03-22-2024, 06:39 AM
  • seqadmin
    Techniques and Challenges in Conservation Genomics
    by seqadmin



    The field of conservation genomics centers on applying genomics technologies in support of conservation efforts and the preservation of biodiversity. This article features interviews with two researchers who showcase their innovative work and highlight the current state and future of conservation genomics.

    Avian Conservation
    Matthew DeSaix, a recent doctoral graduate from Kristen Ruegg’s lab at The University of Colorado, shared that most of his research...
    03-08-2024, 10:41 AM

ad_right_rmr

Collapse

News

Collapse

Topics Statistics Last Post
Started by seqadmin, Yesterday, 06:37 PM
0 responses
11 views
0 likes
Last Post seqadmin  
Started by seqadmin, Yesterday, 06:07 PM
0 responses
10 views
0 likes
Last Post seqadmin  
Started by seqadmin, 03-22-2024, 10:03 AM
0 responses
51 views
0 likes
Last Post seqadmin  
Started by seqadmin, 03-21-2024, 07:32 AM
0 responses
68 views
0 likes
Last Post seqadmin  
Working...
X