Originally posted by habm
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For solexa reads only.
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Two questions about this program -
1) will it handle 454 reads and contigs, please?
2) running it on Ubuntu 8.04 gave the following error messages:
** (MapView.exe:19020): WARNING **: The following assembly referenced from ~/backup/MapView.exe could not be loaded:
Assembly: System.Windows.Forms (assemblyref_index=0)
Version: 2.0.0.0
Public Key: b77a5c561934e089
The assembly was not found in the Global Assembly Cache, a path listed in the MONO_PATH environment variable, or in the location of the executing assembly (~/backup/).
** (MapView.exe:19020): WARNING **: Could not load file or assembly 'System.Windows.Forms, Version=2.0.0.0, Culture=neutral, PublicKeyToken=b77a5c561934e089' or one of its dependencies.
** (MapView.exe:19020): WARNING **: Missing method EnableVisualStyles in assembly ~/backup/MapView.exe, type System.Windows.Forms.Application
Unhandled Exception: System.IO.FileNotFoundException: Could not load file or assembly 'System.Windows.Forms, Version=2.0.0.0, Culture=neutral, PublicKeyToken=b77a5c561934e089' or one of its dependencies.
File name: 'System.Windows.Forms, Version=2.0.0.0, Culture=neutral, PublicKeyToken=b77a5c561934e089'
I presume this is a Mono issue? I have not used Mono or .NET before. Thank you!Leave a comment:
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MapView 3.4.1 for Windows and Linux
Download link1: https://sites.google.com/site/wjwdav...attredirects=0
3.4.1 [2009.6.5]
Coverage analysis (Statistics->Coverage Distribution) changed in order to avoid "Unhandled Exception" on Linux.Leave a comment:
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Hi, Fabio
Thank you for your message.
I have tested three files on Windows about "Coverage Distribution". All of them were OK.
But on linux, two of them were OK and another one got "Unhandled Exception" after the list had shown.
The "Unhandled Exception" on Linux about "Coverage Distribution" confused me. I will try to do coverage analysis on linux in another way.Leave a comment:
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The important part:Originally posted by mikyatope View Post
System.Drawing.GDIPlus ---> System.DllNotFoundException: gdiplus.dll
at (wrapper managed-to-native) System.Drawing.GDIPlus:GdiplusStartup (ulong&,System.Drawing.GdiplusStartupInput&,System.Drawing.GdiplusStartupOutput&)
I think your system or mono need GDIPlus.Leave a comment:
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I got this error with mono and MapView in a CentOS5
its a mono or a mapview issue ?Code:Unhandled Exception: System.TypeInitializationException: An exception was thrown by the type initializer for System.Windows.Forms.XplatUI ---> System.TypeInitializationException: An exception was thrown by the type initializer for System.Drawing.GDIPlus ---> System.DllNotFoundException: gdiplus.dll at (wrapper managed-to-native) System.Drawing.GDIPlus:GdiplusStartup (ulong&,System.Drawing.GdiplusStartupInput&,System.Drawing.GdiplusStartupOutput&) at System.Drawing.GDIPlus..cctor () [0x00000] --- End of inner exception stack trace --- at <0x00000> <unknown method> at System.Drawing.Graphics.FromHdcInternal (IntPtr hdc) [0x00000] at System.Windows.Forms.XplatUIX11.SetDisplay (IntPtr display_handle) [0x00000] at System.Windows.Forms.XplatUIX11..ctor () [0x00000] at System.Windows.Forms.XplatUIX11.GetInstance () [0x00000] at System.Windows.Forms.XplatUI..cctor () [0x00000] --- End of inner exception stack trace --- at <0x00000> <unknown method> at System.Windows.Forms.Application.EnableVisualStyles () [0x00000] at bQ9Wqc5Z49HhsqC7GB.VjrqIScir9R7qjLxc1.kAuOsLUbQ (System.String[] ) [0x00000]
thanks!Leave a comment:
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I am using MapView 3.4.0 on Ubuntu 9.04 using mono. It runs fine for almost everything, but as soon I try to run the coverage analysis (Statistics->Coverage Distribution) the program crashes with the following message:
Can you help with this issue?Code:Unhandled Exception: System.IndexOutOfRangeException: Array index is out of range. at System.Windows.Forms.ListView.GetItemLocation (Int32 index) [0x00000] at System.Windows.Forms.ListView.get_LastVisibleIndex () [0x00000] at (wrapper remoting-invoke-with-check) System.Windows.Forms.ListView:get_LastVisibleIndex () at System.Windows.Forms.ThemeWin32Classic.DrawListViewItems (System.Drawing.Graphics dc, Rectangle clip, System.Windows.Forms.ListView control) [0x00000] at System.Windows.Forms.ListView+ItemControl.OnPaintInternal (System.Windows.Forms.PaintEventArgs pe) [0x00000] at System.Windows.Forms.Control.WmPaint (System.Windows.Forms.Message& m) [0x00000] at System.Windows.Forms.Control.WndProc (System.Windows.Forms.Message& m) [0x00000] at System.Windows.Forms.ListView+ItemControl.WndProc (System.Windows.Forms.Message& m) [0x00000] at System.Windows.Forms.Control+ControlWindowTarget.OnMessage (System.Windows.Forms.Message& m) [0x00000] at System.Windows.Forms.Control+ControlNativeWindow.WndProc (System.Windows.Forms.Message& m) [0x00000] at System.Windows.Forms.NativeWindow.WndProc (IntPtr hWnd, Msg msg, IntPtr wParam, IntPtr lParam) [0x00000] at System.Windows.Forms.XplatUIX11.DispatchMessage (System.Windows.Forms.MSG& msg) [0x00000] at System.Windows.Forms.XplatUI.DispatchMessage (System.Windows.Forms.MSG& msg) [0x00000] at System.Windows.Forms.Application.RunLoop (Boolean Modal, System.Windows.Forms.ApplicationContext context) [0x00000] at System.Windows.Forms.Application.Run (System.Windows.Forms.ApplicationContext context) [0x00000] at System.Windows.Forms.Application.Run (System.Windows.Forms.Form mainForm) [0x00000] at bQ9Wqc5Z49HhsqC7GB.VjrqIScir9R7qjLxc1.kAuOsLUbQ (System.String[] ) [0x00000]
Thank you very much
FabioLeave a comment:
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MapView 3.4.0
Download: https://sites.google.com/site/wjwdav...attredirects=0
3.4.0 [2009.6.1]
Run on Linux (e.g. Ubuntu 9) successfully.
Some bugs were fixed.Leave a comment:
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Special thanks to Cristian!
MapView 3.4.0 Beta3 is running on Linux (Ubuntu 9.04) successfully.
After some changes and tests, I will release MapView 3.4.0 asap.Leave a comment:
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Hi,CristianOriginally posted by cdf View Post
After replying that post, I went to make some changes about MapView. Sorry for not noticing your lastest post.
Thank you very much for testing MapView on Linux.
Here is the beta version :
added a command line parameter "-high".
MapView's default ProcessPriority is Normal.
But when start it with parameter:
MapView -high
MapView will try to gain priority to be high.Leave a comment:
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CRISPR/Cas9 sparked the gene editing revolution for both research and therapeutics.1 But this system still showed severe issues that limited its applications. The most prominent were the heavy reliance on PAM sequences, delivery limitations, double-stranded breaks that prompt unintended edits and cell death, and editing inefficiency (both in targeting and in knock-in reliability).
Despite this, “CRISPR helped turn genome editing from a specialized technique into...07-31-2026, 11:01 AM -
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...07-09-2026, 11:10 AM
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