Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • BLAST output parsing in R?

    Is there a package, or some special way to parse BLAST output by programming in R? Thanks.

  • #2
    the easiest way is to produce a tabular output from blast (-m 8 param I think ) and then to read this output in R with the command

    var <- read.table(out.blast , sep="\t")

    Comment


    • #3
      Use "-outfmt 6" to get tabular output from blast.

      Sam

      Comment


      • #4
        Got it, thank you!

        Comment

        Latest Articles

        Collapse

        • seqadmin
          Understanding Genetic Influence on Infectious Disease
          by seqadmin




          During the COVID-19 pandemic, scientists observed that while some individuals experienced severe illness when infected with SARS-CoV-2, others were barely affected. These disparities left researchers and clinicians wondering what causes the wide variations in response to viral infections and what role genetics plays.

          Jean-Laurent Casanova, M.D., Ph.D., Professor at Rockefeller University, is a leading expert in this crossover between genetics and infectious...
          09-09-2024, 10:59 AM
        • seqadmin
          Addressing Off-Target Effects in CRISPR Technologies
          by seqadmin






          The first FDA-approved CRISPR-based therapy marked the transition of therapeutic gene editing from a dream to reality1. CRISPR technologies have streamlined gene editing, and CRISPR screens have become an important approach for identifying genes involved in disease processes2. This technique introduces targeted mutations across numerous genes, enabling large-scale identification of gene functions, interactions, and pathways3. Identifying the full range...
          08-27-2024, 04:44 AM

        ad_right_rmr

        Collapse

        News

        Collapse

        Topics Statistics Last Post
        Started by seqadmin, Today, 01:02 PM
        0 responses
        8 views
        0 likes
        Last Post seqadmin  
        Started by seqadmin, Yesterday, 06:39 AM
        0 responses
        10 views
        0 likes
        Last Post seqadmin  
        Started by seqadmin, 09-11-2024, 02:44 PM
        0 responses
        13 views
        0 likes
        Last Post seqadmin  
        Started by seqadmin, 09-06-2024, 08:02 AM
        0 responses
        148 views
        0 likes
        Last Post seqadmin  
        Working...
        X