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  • BLAST output parsing in R?

    Is there a package, or some special way to parse BLAST output by programming in R? Thanks.

  • #2
    the easiest way is to produce a tabular output from blast (-m 8 param I think ) and then to read this output in R with the command

    var <- read.table(out.blast , sep="\t")

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    • #3
      Use "-outfmt 6" to get tabular output from blast.

      Sam

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      • #4
        Got it, thank you!

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