Hello,
I need to obtain .srf files from available public data (like .fastq or .sra).
I think that a way (the only one?) is to follow these instructions: http://www.ncbi.nlm.nih.gov/books/NBK47540/
and obtain illumina data with illumina-dump and then use illumina2srf.
The first step works for me and generates a bunch of qcal.txt and seq.txt files but after downloading and compiling sequenceread and io_lib from sourceforge illumina2srf complains about some missing files (BustardSummary.xml) and then dies with a segmentation fault.
Any ideas? Any more straightforward method available?
Thanks,
E.
I need to obtain .srf files from available public data (like .fastq or .sra).
I think that a way (the only one?) is to follow these instructions: http://www.ncbi.nlm.nih.gov/books/NBK47540/
and obtain illumina data with illumina-dump and then use illumina2srf.
The first step works for me and generates a bunch of qcal.txt and seq.txt files but after downloading and compiling sequenceread and io_lib from sourceforge illumina2srf complains about some missing files (BustardSummary.xml) and then dies with a segmentation fault.
Any ideas? Any more straightforward method available?
Thanks,
E.