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  • EGrassi
    Member
    • Oct 2010
    • 66

    #1

    illumina2srf

    Hello,

    I need to obtain .srf files from available public data (like .fastq or .sra).
    I think that a way (the only one?) is to follow these instructions: http://www.ncbi.nlm.nih.gov/books/NBK47540/
    and obtain illumina data with illumina-dump and then use illumina2srf.
    The first step works for me and generates a bunch of qcal.txt and seq.txt files but after downloading and compiling sequenceread and io_lib from sourceforge illumina2srf complains about some missing files (BustardSummary.xml) and then dies with a segmentation fault.

    Any ideas? Any more straightforward method available?

    Thanks,
    E.

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