hello, I'm new to the bioinformatics, but my first job is using dindel. On the manual it says: "dindel --analysis getCIGARindels --bamFile sample.bam \
--outputFile sample.dindel_output --ref ref.fa". Are these commands? How to run it? Should I input these in Unix? Please bear my stupid question! Thanks a lot!
--outputFile sample.dindel_output --ref ref.fa". Are these commands? How to run it? Should I input these in Unix? Please bear my stupid question! Thanks a lot!
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